v5-v6 16s rrna  (Pyrosequencing Inc)

Journal: Data in Brief

Article Title: Dataset of core and differentially abundant bacteria in various compartments of farm-cultivated and home-planted chilli plants ( Capsicum frutescens )

doi: 10.1016/j.dib.2024.110273

Figure Lengend Snippet:

Article Snippet: Data collection , A total of five sample groups were collected from both farm-cultivated and home-planted chilli plants: bulk soil (BS), rhizopheric soil (RS), root endophytes (Ren), leaves (L), and fruit endophytes (Fen). Total DNA was extracted from the sample and the 16S rRNA gene amplicon (V5-V6 region) was sequenced by the Illumina NovaSeq 6000 System (2 × 150 bp paired-end reads)..

Techniques: Amplification, Sequencing

Journal: Data in Brief

Article Title: Dataset of core and differentially abundant bacteria in various compartments of farm-cultivated and home-planted chilli plants ( Capsicum frutescens )

doi: 10.1016/j.dib.2024.110273

Figure Lengend Snippet:

Article Snippet: Targeted 16S rRNA gene (V5-V6 region) was sequenced using the Illumina NovaSeq 6000 platform.

Techniques: Amplification, Sequencing

Journal: Microorganisms

Article Title: Blood Stream Microbiota Dysbiosis Establishing New Research Standards in Cardio-Metabolic Diseases, A Meta-Analysis Study

doi: 10.3390/microorganisms11030777

Figure Lengend Snippet: Summary of different human blood microbiota studies conducted on healthy or diseased individuals.

Article Snippet: Qiu et al., 2019 , 150 (50 T2D 100 HI) , Blood plasma , Nested case-control study , China , 16S rRNA amplicon sequencing by Illumina MiSeq (V5-V6) , Aquabacterium , Pseudonocardia , and Xanthomonas genera and Bacteroides spp. showed an inverse while Alishewanella, Actinotalea , Pseudoclavibacter , Sediminibacterium spp. showed a positive correlation with diabetes. , [ ] .

Techniques: Microscopy, Sequencing, Clone Assay, Incubation, Real-time Polymerase Chain Reaction, Amplification, Concentration Assay, RNA Sequencing Assay

Journal: Digestive diseases and sciences

Article Title: Microbiome Composition in Pediatric Populations from Birth to Adolescence: Impact of Diet and Prebiotic and Probiotic Interventions.

doi: 10.1007/s10620-020-06092-x

Figure Lengend Snippet: Characteristics of Studies Investigating Dietary Effects on Microbiome Composition in Infants and Children

Article Snippet: Italy and Burkina Faso 1-6 y N=29 , Cross-sectional , Italian parents completed a detailed medical, diet, and lifestyle survey Burkina Faso parents provided in-depth interview on children’s diet and a 3-d dietary questionnaire , V5-V6 16S rRNA by 454-pyrosequencing , Firmicutes-to-Bacteroidetes ratio (F:B ratio) was ~6-fold higher in Italian than Burkina Faso children 3 genera involved in utilization plant polysaccharides (Prevotella , Xylanibacter ( Bacteroidetes ), and Treponema ( Spirochaetes ) were higher in Burkina Faso children. , 28.

Techniques: Shotgun Sequencing, Starch, Microarray, Modification, Illumina Sequencing, Clinical Proteomics, Western Blot

Journal: Digestive diseases and sciences

Article Title: Microbiome Composition in Pediatric Populations from Birth to Adolescence: Impact of Diet and Prebiotic and Probiotic Interventions.

doi: 10.1007/s10620-020-06092-x

Figure Lengend Snippet: Characteristics of Studies Investigating Effects of Dietary Fibers and Prebiotics on the Fecal Microbiota of Healthy Children and Adolescents

Article Snippet: Italy and Burkina Faso 1-6 y N=29 , Cross-sectional , Italian parents completed a detailed medical, diet, and lifestyle survey Burkina Faso parents provided in-depth interview on children’s diet and a 3-d dietary questionnaire , V5-V6 16S rRNA by 454-pyrosequencing , Firmicutes-to-Bacteroidetes ratio (F:B ratio) was ~6-fold higher in Italian than Burkina Faso children 3 genera involved in utilization plant polysaccharides (Prevotella , Xylanibacter ( Bacteroidetes ), and Treponema ( Spirochaetes ) were higher in Burkina Faso children. , 28.

Techniques: Bacteria, Control

Journal: Digestive diseases and sciences

Article Title: Microbiome Composition in Pediatric Populations from Birth to Adolescence: Impact of Diet and Prebiotic and Probiotic Interventions.

doi: 10.1007/s10620-020-06092-x

Figure Lengend Snippet: Characteristics of Studies Investigating Probiotic Administration during Pregnancy and after Delivery on Infant Fecal Microbiota

Article Snippet: Italy and Burkina Faso 1-6 y N=29 , Cross-sectional , Italian parents completed a detailed medical, diet, and lifestyle survey Burkina Faso parents provided in-depth interview on children’s diet and a 3-d dietary questionnaire , V5-V6 16S rRNA by 454-pyrosequencing , Firmicutes-to-Bacteroidetes ratio (F:B ratio) was ~6-fold higher in Italian than Burkina Faso children 3 genera involved in utilization plant polysaccharides (Prevotella , Xylanibacter ( Bacteroidetes ), and Treponema ( Spirochaetes ) were higher in Burkina Faso children. , 28.

Techniques: Capsules, Bacteria, Control, Sequencing

Journal: Digestive diseases and sciences

Article Title: Microbiome Composition in Pediatric Populations from Birth to Adolescence: Impact of Diet and Prebiotic and Probiotic Interventions.

doi: 10.1007/s10620-020-06092-x

Figure Lengend Snippet: Characteristics of Studies Investigating Probiotic Administration on the Fecal Microbiota of Healthy Children Under 18 Years-of-Age

Article Snippet: Italy and Burkina Faso 1-6 y N=29 , Cross-sectional , Italian parents completed a detailed medical, diet, and lifestyle survey Burkina Faso parents provided in-depth interview on children’s diet and a 3-d dietary questionnaire , V5-V6 16S rRNA by 454-pyrosequencing , Firmicutes-to-Bacteroidetes ratio (F:B ratio) was ~6-fold higher in Italian than Burkina Faso children 3 genera involved in utilization plant polysaccharides (Prevotella , Xylanibacter ( Bacteroidetes ), and Treponema ( Spirochaetes ) were higher in Burkina Faso children. , 28.

Techniques: Control, Microarray, Suspension